Bioinformatics

Intratumoral heterogeneity in microsatellite instability status at single cell resolution

Intratumoral heterogeneity in microsatellite i...

Bioinformatics
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Cathal Seoighe
12 views
MLMarker: A machine learning framework for tissue inference and biomarker discovery

MLMarker: A machine learning framework for tis...

Bioinformatics
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librarian
10 views
All-Atom Protein Sequence Design using Discrete Diffusion Models

All-Atom Protein Sequence Design using Discret...

Bioinformatics
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librarian
11 views
MitoDelta: identifying mitochondrial DNA deletions at cell-type resolution from single-cell RNA sequencing data

MitoDelta: identifying mitochondrial DNA delet...

Bioinformatics
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librarian
11 views
Gene and cell line efficiency of CRISPR computed by tensor decomposition in genome-wide CRISPR-Cas9 knockout screens

Gene and cell line efficiency of CRISPR comput...

Bioinformatics
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librarian
10 views
HiFIseek: gene-specific enrichment of high-impact mutations in associated genomic regions

HiFIseek: gene-specific enrichment of high-imp...

Bioinformatics
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Rafael Riudavets Puig
25 views
Uncovering Functional Gene Regulatory Networks in Bulk and Single-Cell Data through Robust Transcription Factor Activity Estimation and Model-Guided Experimental Validation

Uncovering Functional Gene Regulatory Networks...

Bioinformatics
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librarian
20 views
AbDesign: Database of point mutants of antibodies with associated structures reveals poor generalization of binding predictions from machine learning models.

AbDesign: Database of point mutants of antibod...

Bioinformatics
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librarian
20 views
cfDNAanalyzer: a comprehensive toolkit for analyzing cell-free DNA genomic sequencing data in liquid biopsy

cfDNAanalyzer: a comprehensive toolkit for ana...

Bioinformatics
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Yumei Li
20 views
EndoGenius: Enabling comprehensive identification and quantitation of endogenous peptides

EndoGenius: Enabling comprehensive identificat...

Bioinformatics
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Lingjun Li
24 views
HAVEN: Hierarchical Attention for Viral protEin-based host iNference

HAVEN: Hierarchical Attention for Viral protEi...

Bioinformatics
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librarian
24 views
Integrating structural homology with deep learning to achieve highly accurate protein-protein interface prediction for the human interactome

Integrating structural homology with deep lear...

Bioinformatics
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Barry Honig
31 views
Analysis of 3'-seq data from multiple E. coli studies identifies diverging results sets and raw data characteristics despite similar collection conditions

Analysis of 3'-seq data from multiple E. coli ...

Bioinformatics
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librarian
30 views
A fast TMT-based proteomic workflow reveals neural enrichment in neurospheres of hiPSC-derived neural stem cells

A fast TMT-based proteomic workflow reveals ne...

Bioinformatics
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Magno Junqueira
31 views
Targeting Listeria virulence-regulon glutathion-cavity by evolutecas

Targeting Listeria virulence-regulon glutathio...

Bioinformatics
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librarian
42 views
Identification of Novel Marine-based Inhibitors against Tetracycline Destructase in Acinetobacter Baumannii using Computational Approaches

Identification of Novel Marine-based Inhibitor...

Bioinformatics
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Vigneshwar Ramakrishnan
43 views
Better antibodies engineered with a GLIMPSE of human data

Better antibodies engineered with a GLIMPSE of...

Bioinformatics
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librarian
40 views
Distinct Transcriptomic Biomarkers and Pathways Associated with Cardiovascular and Neurovascular Dysregulation in Long COVID-19 Brain Fog

Distinct Transcriptomic Biomarkers and Pathway...

Bioinformatics
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librarian
39 views
SARS-CoV-2-induced dysregulation in ADAR editing patterns persists post viral clearance in individuals with mild COVID-19

SARS-CoV-2-induced dysregulation in ADAR editi...

Bioinformatics
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librarian
39 views
Insilico investigation of novel Plasmodium Falciparum Glycogen Synthase Kinase(pfGSk3β) inhibitors for the treatment of malaria infection

Insilico investigation of novel Plasmodium Fal...

Bioinformatics
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librarian
45 views
Gender-specific MetS prediction using pathophysiological determinants: Beyond diagnostic constraints

Gender-specific MetS prediction using pathophy...

Bioinformatics
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Karishma Desai
46 views
Detect de novo expressed ORFs in transcriptomes withDESwoMAN

Detect de novo expressed ORFs in transcriptome...

Bioinformatics
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librarian
46 views
A Generalizable Machine Learning Model for Early Detection of Hepatocellular Carcinoma Using Bisulfite Sequencing Data

A Generalizable Machine Learning Model for Ear...

Bioinformatics
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librarian
53 views
TaxonReportViewer: Parsing and Visualizing Taxonomic Hierarchies in Metagenomic Datasets

TaxonReportViewer: Parsing and Visualizing Tax...

Bioinformatics
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librarian
53 views
Decoding PDI diversity: insights into structure, domains, and functionality in sorghum

Decoding PDI diversity: insights into structur...

Bioinformatics
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Gerhard Schenk
60 views
PhenoGraph: A Multi-Agent Framework for Phenotype-driven Discovery in Spatial Transcriptomics Data Augmented with Knowledge Graphs

PhenoGraph: A Multi-Agent Framework for Phenot...

Bioinformatics
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librarian
59 views
Monalisa: An Open Source, Documented, User-Friendly MATLAB Toolbox for Magnetic Resonance Imaging Reconstruction

Monalisa: An Open Source, Documented, User-Fri...

Bioinformatics
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librarian
56 views
Cut-Detector: A Tool for Automated Temporal Analysis of Late Cytokinetic Events

Cut-Detector: A Tool for Automated Temporal An...

Bioinformatics
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librarian
57 views
Boosting AlphaFold Protein Tertiary Structure Prediction through MSA Engineering and Extensive Model Sampling and Ranking in CASP16

Boosting AlphaFold Protein Tertiary Structure ...

Bioinformatics
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librarian
59 views
Identification of reactive CpGs and RNA expression in early COVID-19 through cis-eQTM analysis reflecting disease severity and recovery

Identification of reactive CpGs and RNA expres...

Bioinformatics
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librarian
60 views
Uncovering Heterogeneous Effects via Localized Feature Selection

Uncovering Heterogeneous Effects via Localized...

Bioinformatics
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librarian
69 views
SMART: An Integrated Platform Revolutionizing Cryo-Electron Microscopy Workflow from Data Acquisition to Atomic Modeling

SMART: An Integrated Platform Revolutionizing ...

Bioinformatics
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librarian
66 views
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