Bioinformatics

iSHARC: Integrating scMultiome data for heterogeneity and regulatory analysis in cancer

iSHARC: Integrating scMultiome data for hetero...

Bioinformatics
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librarian
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From Pairwise Distances to Neighborhood Preservation: Benchmarking Dimensionality Reduction Algorithms for CyTOF, scRNA-seq, and CITE-seq

From Pairwise Distances to Neighborhood Preser...

Bioinformatics
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librarian
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OmiXAI: An Ensemble XAI Pipeline for Interpretable Deep Learning in Omics Data

OmiXAI: An Ensemble XAI Pipeline for Interpret...

Bioinformatics
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Andrey Borevskiy
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ScIsoX: A Multidimensional Framework for Measuring Transcriptomic Complexity in Single-Cell Long-Read Sequencing Data

ScIsoX: A Multidimensional Framework for Measu...

Bioinformatics
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librarian
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Precision Through Frequency-Aware Prioritization: Introducing the Bouziane Similarity Index (BSI) for Rare Variants.

Precision Through Frequency-Aware Prioritizati...

Bioinformatics
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librarian
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Cellpose-SAM: superhuman generalization for cellular segmentation

Cellpose-SAM: superhuman generalization for ce...

Bioinformatics
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librarian
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LipidCruncher: An open-source web application for processing, visualizing, and analyzing lipidomic data

LipidCruncher: An open-source web application ...

Bioinformatics
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librarian
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Prediction of Antibody Non-Specificity using Protein Language Models and Biophysical Parameters

Prediction of Antibody Non-Specificity using P...

Bioinformatics
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Laila Sakhnini
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EXPRESSION GRAPH NETWORK FRAMEWORK FOR BIOMARKERDISCOVERY

EXPRESSION GRAPH NETWORK FRAMEWORK FOR BIOMARK...

Bioinformatics
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Yang Liu
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Variant Classification Using Proteomics-Informed Large Language Models Increases Power of Rare Variant Association Studies and Enhances Target Discovery

Variant Classification Using Proteomics-Inform...

Bioinformatics
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Maya Ghoussaini
10 views
SquiDBase: a community resource of raw nanopore data from microbes

SquiDBase: a community resource of raw nanopor...

Bioinformatics
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Wim Cuypers
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LC-Inspector: a simple open-source viewer for targeted hyphenated mass spectrometry analysis

LC-Inspector: a simple open-source viewer for ...

Bioinformatics
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librarian
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Fast and Accurate Peptide - MHC Structure Prediction via an Equivariant Diffusion Model

Fast and Accurate Peptide - MHC Structure Pred...

Bioinformatics
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librarian
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An image analysis pipeline to quantify the spatial distribution of cell markers in stroma-rich tumors

An image analysis pipeline to quantify the spa...

Bioinformatics
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Simon Nørrelykke
4 views
RECUR: Identifying recurrent amino acid substitutions from multiple sequence alignments

RECUR: Identifying recurrent amino acid substi...

Bioinformatics
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librarian
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PepSeek: Universal Functional Peptide Discovery with Cooperation Between Specialized Deep Learning Models and Large Language Model

PepSeek: Universal Functional Peptide Discover...

Bioinformatics
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librarian
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Small molecule bioactivity benchmarks are often well-predicted by counting cells

Small molecule bioactivity benchmarks are ofte...

Bioinformatics
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Srijit Seal
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Genome-wide identification and expression analysis of CDPK proteins in agarwood-producing Aquilaria agallocha trees

Genome-wide identification and expression anal...

Bioinformatics
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Sofia Banu
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TransAgent: Dynamizing Transcriptional Regulation Analysis via Multi-omics-Aware AI Agent

TransAgent: Dynamizing Transcriptional Regulat...

Bioinformatics
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Qiuyu Wang
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SGCRNA: Spectral Clustering-Guided Co-Expression Network Analysis Without Scale-Free Constraints for Multi-Omic Data

SGCRNA: Spectral Clustering-Guided Co-Expressi...

Bioinformatics
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librarian
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SCRIPT: predicting single-cell long-range cis-regulation based on pretrained graph attention networks

SCRIPT: predicting single-cell long-range cis-...

Bioinformatics
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librarian
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On learning functions over biological sequence space: relating Gaussian process priors, regularization, and gauge fixing

On learning functions over biological sequence...

Bioinformatics
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Samantha Petti
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Investigating the prognostic value of KCNN4 gene expression in human pancreatic adenocarcinoma by bioinformatic analysis

Investigating the prognostic value of KCNN4 ge...

Bioinformatics
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Umme Salma Zohora
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Singe cell RNA sequencing data processing using cloud-based serverless computing

Singe cell RNA sequencing data processing usin...

Bioinformatics
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Ka Yee Yeung
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Robust Prediction of Multiple Protein Conformations with Entropy Guidance

Robust Prediction of Multiple Protein Conforma...

Bioinformatics
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librarian
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Transcriptomic analysis reveals immune signatures associated with specific cutaneous manifestations of lupus in systemic lupus erythematosus

Transcriptomic analysis reveals immune signatu...

Bioinformatics
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librarian
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Telomerase RNA gene duplications drive telomeric repeatdiversity and evolution in Andrena bees

Telomerase RNA gene duplications drive telomer...

Bioinformatics
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librarian
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Anchors for Homology-Based Scaffolding

Anchors for Homology-Based Scaffolding

Bioinformatics
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Karl Käther
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Identification of the Best Filter-based Feature Selection Techniques for Microarray Datasets

Identification of the Best Filter-based Featur...

Bioinformatics
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librarian
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Learning copy number dependent variation in single tumour cell transcriptomes with deep generative models

Learning copy number dependent variation in si...

Bioinformatics
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librarian
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A global survey of intramolecular isopeptide bonds

A global survey of intramolecular isopeptide bonds

Bioinformatics
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librarian
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SPAED: Harnessing AlphaFold Output for Accurate Segmentation of Phage Endolysin Domains

SPAED: Harnessing AlphaFold Output for Accurat...

Bioinformatics
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librarian
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