Bioinformatics

The phylodynamic threshold of measurably evolving populations

The phylodynamic threshold of measurably evolv...

Bioinformatics
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Ariane Weber
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Evaluating microbial network inference methods: Moving beyond synthetic data with reproducibility-driven benchmarks

Evaluating microbial network inference methods...

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librarian
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CAPTAIN: A multimodal foundation model pretrained on co-assayed single-cell RNA and protein

CAPTAIN: A multimodal foundation model pretrai...

Bioinformatics
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Yan Zhang
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BAGEL: Protein Engineering via Exploration of an Energy Landscape

BAGEL: Protein Engineering via Exploration of ...

Bioinformatics
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Jakub Lála
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A novel subtyping method for TNBC with implications for prognosis and therapy

A novel subtyping method for TNBC with implica...

Bioinformatics
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Shankar Subramaniam
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GAME: Genomic API for Model Evaluation

GAME: Genomic API for Model Evaluation

Bioinformatics
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librarian
2 views
Mechanism-Aware Protein-Protein Interaction Prediction via Contact-Guided Dual Attention on Protein Language Models

Mechanism-Aware Protein-Protein Interaction Pr...

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Sheng-you Huang
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The evolution of function in the DNA binding domain of the CRP/FNR family

The evolution of function in the DNA binding d...

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librarian
1 view
Statistical knockoffs improve biomarker discovery fromtranscriptomic data

Statistical knockoffs improve biomarker discov...

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Florian Massip
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Undersampling techniques for non-linear chemical space visualization

Undersampling techniques for non-linear chemic...

Bioinformatics
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librarian
2 views
ANABAG: Annotated Antibody Antigen dataset with unique features for Antibody Engineering Applications

ANABAG: Annotated Antibody Antigen dataset wit...

Bioinformatics
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librarian
8 views
Validation of Morphology-Guided Computational Enhancement for Single-Cell Resolution Spatial Transcriptomics

Validation of Morphology-Guided Computational ...

Bioinformatics
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librarian
3 views
Evaluating Molecular Docking Programs for RNA-Targeted Ligand Screening: Influence of Binding Modes and Ligand Types

Evaluating Molecular Docking Programs for RNA-...

Bioinformatics
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Roland Huber
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Exploring GNRA tetraloop-like motifs in nucleic acid 3D structures

Exploring GNRA tetraloop-like motifs in nuclei...

Bioinformatics
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Eugene Baulin
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DrugDomain2.0: comprehensive database of protein domains-ligands/drugs interactions across the whole Protein Data Bank

DrugDomain2.0: comprehensive database of prote...

Bioinformatics
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librarian
7 views
A large-scale comparative metagenomic analysis of short-read sequencing platforms indicates high taxonomic concordance and functional analysis challenges

A large-scale comparative metagenomic analysis...

Bioinformatics
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Elin Org
2 views
PlantVarFilter: A Comprehensive Pipeline for Variant Filtering and Genome-Wide Association Analysis in Plant Genomics

PlantVarFilter: A Comprehensive Pipeline for V...

Bioinformatics
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Ahmed Yassin
1 view
From sequence to signature: Uncovering multiscale AMR features across bacterial pathogens with supervised machine learning

From sequence to signature: Uncovering multisc...

Bioinformatics
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librarian
2 views
Revisiting the Fungal ITS2 Sequencing Data from the Human Microbiome Project

Revisiting the Fungal ITS2 Sequencing Data fro...

Bioinformatics
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Ju-Sheng Zheng
3 views
Product-stabilized filamentation by human glutamine synthetase allosterically tunes metabolic activity

Product-stabilized filamentation by human glut...

Bioinformatics
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librarian
6 views
Why do some predicted protein structures fold poorly? Benchmarking AlphaFold, ESMFold, and Boltz in maize

Why do some predicted protein structures fold ...

Bioinformatics
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librarian
16 views
Multi-omics time-series analysis in microbiome research: a systematic review

Multi-omics time-series analysis in microbiome...

Bioinformatics
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librarian
11 views
Structural motif search across the protein-universe with Folddisco

Structural motif search across the protein-uni...

Bioinformatics
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librarian
43 views
PIMENTO: A PrIMEr infereNce TOolkit to facilitate large-scale calling of amplicon sequence variants

PIMENTO: A PrIMEr infereNce TOolkit to facilit...

Bioinformatics
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librarian
5 views
A Computational Workflow for Structure-Guided Design of Potent and Selective Kinase Peptide Substrates

A Computational Workflow for Structure-Guided ...

Bioinformatics
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Kenneth Westover
9 views
SpatialMap: A Scalable Deep Learning Method for Cell Typing in Subcellular Spatial Transcriptomics

SpatialMap: A Scalable Deep Learning Method fo...

Bioinformatics
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librarian
5 views
Gain of Function p53 mutant R273H confers distinct methylation profiles and consequent partial or full EMT states to colon tumour

Gain of Function p53 mutant R273H confers dist...

Bioinformatics
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librarian
8 views
SSAlign: Ultrafast and Sensitive Protein Structure Search at Scale

SSAlign: Ultrafast and Sensitive Protein Struc...

Bioinformatics
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Yan Wang
36 views
Transformer-based Deep Learning for Glycan Structure Inference from Tandem Mass Spectrometry

Transformer-based Deep Learning for Glycan Str...

Bioinformatics
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Rudiyanto Gunawan
2 views
OMIDIENT: Multiomics Integration for Cancer by Dirichlet Auto-Encoder Networks

OMIDIENT: Multiomics Integration for Cancer by...

Bioinformatics
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librarian
2 views
In Situ Inference of Copy Number Variations in Image-Based Spatial Transcriptomics

In Situ Inference of Copy Number Variations in...

Bioinformatics
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librarian
3 views
Visual-like Template Diffusion: Boosting Single-Sequence Protein Structure Prediction by Adapting Image Diffusion Models

Visual-like Template Diffusion: Boosting Singl...

Bioinformatics
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Zhen Cui
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