pholidosis: an R package to compare biological surface patterns

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pholidosis: an R package to compare biological surface patterns

Authors

Krone, I. W.

Abstract

Atop the heads of many lizards and snakes sit complex patterns of flattened scales, differing in their sizes, shapes, colors, textures, and inter-relationships. These patterns of head scalation-called \"pholidosis\"-are often diagnostic to species or genera and therefore of great importance to reptile taxonomy, yet they have never been investigated in a detailed comparative context. Similar patterns can be seen in the scutes of turtle shells and the \"cells\" of insect wings; these each consist of a surface pattern made up of discrete units that can be considered homologous between individuals, populations, and species. Here, I describe an R package, pholidosis, designed to analyze these patterns as networks, providing tools for their construction, analysis, and visualization, and comparative analysis via an edit distance metric.

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